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AddTrackModel

Auto-generated from the @jbrowse/mobx-state-tree model in the source — see the developer guide for concepts. Provided by the data-management plugin. View source.

Holds the Add track widget's form: the data file and its index, the adapter and track type guessed from them, the track name and assembly, and the URL list for adding several tracks at once.

Properties

MemberDescription
id
id: ElementId
type
type: types.literal('AddTrackWidget')
view
view: types.safeReference(
        pluginManager.pluggableMstType('view', 'stateModel'),
      )
trackContainerId
trackContainerId: types.maybe(types.string)		Which of the view's track containers the new track opens in, by id. Absent, the usual case, means the view itself. The same property on HierarchicalTrackSelectorWidget sets this one.

Volatiles

MemberDescription
workflowName
string		The workflow on screen. Outside createVolatileState, so it outlives clearData: a user adding several MAF tracks keeps the MAF form.
trackData
FileLocation | undefined
indexTrackData
FileLocation | undefined
altAssemblyName
string
altTrackName
string | undefined
altTrackType
string
adapterHint
string
textIndexTrack
boolean
textIndexingConf
IndexingAttr | undefined
mixinData
Record<string, unknown>
mixinMissing
string | undefined
detectedIndexName
string | undefined
workflowForms
Record<string, object | undefined>

Getters

MemberDescription
trackContainer
TrackContainer | undefined		The track list a submitted track opens in.
trackAdapter
AdapterConfig | undefined
trackName
string
submittableTrackName
string		The trimmed name the track is added under. Check this one for an all-whitespace entry: !!trackName accepts ' ' and creates a track whose name is blank in the selector.
uris
(string | undefined)[]
isFtp
boolean
isRelativeUrl
boolean
wrongProtocol
boolean
adapterHintNotConfigurable
boolean		Returns true if the user selected an adapter from the dropdown but the extension point couldn't build a config for it
assembly
string | undefined
trackAdapterType
string | undefined
trackType
string
warningMessage
"" | "Warning: JBrowse cannot access files using the ftp protocol" | "Warning: You entered a http:// resources but we cannot access HTTP\n resources from JBrowse when it is running on https. Please use an\n https URL for your track, or access the JBrowse app from the http\n protocol" | "Warning: one or more of your files do not provide the protocol e.g.\n https://, please provide an absolute URL unless you are sure a\n relative URL is intended."

Methods

MemberDescription
getTrackConfig
(timestamp: number) => DraftTrackConfig | undefined

Actions

MemberDescription
setMixinData
(arg: Record<string, unknown>, missing?: string | undefined) => void
What the adapter's picker adds to the track config, and why it cannot make a track yet, if it cannot.
setWorkflowForm
(key: string, form: object) => void		Store one workflow's form; workflowForm in core reads and patches it.
setWorkflowName
(name: string) => void
setAdapterHint
(obj: string) => void
setTextIndexingConf
(conf: IndexingAttr) => void
setTextIndexTrack
(flag: boolean) => void
setTrackData
(obj: FileLocation) => void
setIndexTrackData
(obj: FileLocation) => void
setDetectedIndex
(obj: FileLocation, name: string) => void		Records an index found beside the main file. Ignored when an index is already set, since a probe resolving late must never overwrite one typed while it was in flight.
setAssembly
(str: string) => void
setTrackName
(str: string) => void
setTrackType
(str: string) => void
clearData
() => void