NCListAdapter

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the legacy-jbrowse plugin. View source.

Example usage#

Reads a JBrowse 1 NCList store in place, so an existing JBrowse 1 instance's data serves JBrowse 2 without re-processing. {refseq} in the URL template is substituted per sequence, which is how the store is laid out on disk:

{
  type: 'FeatureTrack',
  trackId: 'my_track',
  name: 'My track',
  assemblyNames: ['hg38'],
  adapter: {
    type: 'NCListAdapter',
    rootUrlTemplate: {
      uri: 'https://example.com/jbrowse1/data/tracks/genes/{refseq}/trackData.json',
    },
  },
}

See the Config slots section below for all available configuration fields.

Related links#

• Track: FeatureTrack
• Display: LinearArcDisplay
• Display: LinearBasicDisplay
• Display: LinearMultiRowFeatureDisplay
• Display: LinearScoreDisplay

Config slots#

These slots go inside the track's adapter: "adapter": { "type": "NCListAdapter", ... }. This adapter has no uri shorthand — give it the location slots below. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

{
    uri: '/path/to/my/{refseq}/trackData.json',
    locationType: 'UriLocation',
  }