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ReferenceSequenceTrack

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Also note: this document represents the config API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag

Source code

GitHub page

Docs​

used to display base level DNA sequence tracks

ReferenceSequenceTrack - Identifier​

slot: explicitIdentifier​

ReferenceSequenceTrack - Slots​

slot: adapter​

configuration for track adapter

adapter: pluginManager.pluggableConfigSchemaType('adapter')

slot: displays​

configuration for the displays e.g. LinearReferenceSequenceDisplay

displays: types.array(pluginManager.pluggableConfigSchemaType('display'))

slot: name​

name: {
        type: 'string',
        description:
          'optional track name, otherwise uses the "Reference sequence (assemblyName)"',
        defaultValue: '',
      }

slot: sequenceType​

sequenceType: {
        type: 'string',
        description: 'either dna or pep',
        defaultValue: 'dna',
      }

slot: description​

description: {
        description: 'a description of the track',
        type: 'string',
        defaultValue: '',
      }

slot: metadata​

metadata: {
        type: 'frozen',
        description: 'anything to add about this track',
        defaultValue: {},
      }

slot: formatAbout.config​

config: {
          type: 'frozen',
          description: 'formats configuration in about dialog',
          defaultValue: {},
          contextVariable: ['config'],
        }

slot: formatAbout.hideUris​

hideUris: {
          type: 'boolean',
          defaultValue: false,
        }